RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00028
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00028
Molecule name [
?
]:
SOLUTION STRUCTURE OF THE P5 HAIRPIN FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NM
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1C0O
Reference [
?
]:
G.COLMENAREJO,I.TINOCO JR.. STRUCTURE AND THERMODYNAMICS OF METAL BINDING IN THE P5 HELIX OF A GROUP I INTRON RIBOZYME.. J.MOL.BIOL. V. 290 119 1999 ASTM JMOBAK UK ISSN 0022-2836
Type [
?
]:
Group I Intron
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
TETRAHYMENA THERMOPHILA
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
14
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
2
Number of paired bases [
?
]:
12
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
6
Maximum length of a stem [
?
]:
6
Average length of a stem [
?
]:
6
Minimum length of a stem [
?
]:
6
Maximum estimated free energy [
?
]:
-7.1
Average estimated free energy [
?
]:
-7.1
Minimum estimated free energy [
?
]:
-7.1
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
2
Average number of free bases in hairpin loops [
?
]:
2
Minimum number of free bases in hairpin loop [
?
]:
2
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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