RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00028
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00028
Molecule name [?]:	SOLUTION STRUCTURE OF THE P5 HAIRPIN FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NM
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1C0O
Reference [?]:	G.COLMENAREJO,I.TINOCO JR.. STRUCTURE AND THERMODYNAMICS OF METAL BINDING IN THE P5 HELIX OF A GROUP I INTRON RIBOZYME.. J.MOL.BIOL. V. 290 119 1999 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Group I Intron	[?] PS figure PDF figure Figure from original source
Organism [?]:	TETRAHYMENA THERMOPHILA
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	14
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	2
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-7.1
Average estimated free energy [?]:	-7.1
Minimum estimated free energy [?]:	-7.1

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features