RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00030 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00030 Molecule name [?]: 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION Source [?]: RCSB Protein Data Bank Source ID [?]: 1C2X Reference [?]: F.MUELLER,I.SOMMER,P.BARANOV,R.MATADEEN,M.STOLDT, J.WOHNERT,M.GORLACH,M.VAN HEEL,R.BRIMACOMBE. THE 3D ARRANGEMENT OF THE 23 S AND 5 S RRNA IN THE ESCHERICHIA COLI 50 S RIBOSOMAL SUBUNIT BASED ON A CRYO-ELECTRON MICROSCOPIC RECONSTRUCTION AT 7.5 A RESOLUTION.. J.MOL.BIOL. V. 298 35 2000 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: ESCHERICHIA COLI Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 7.50 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 120 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: CRW_01516, CRW_00573, CRW_00585 Number of domains [?]: 1 Number of unpaired bases [?]: 44 Number of paired bases [?]: 76

Click on any header below for additional features.

Stem features Number of stems [?]: 6 Number of base pairs in stems [?]: 38 Maximum length of a stem [?]: 11 Average length of a stem [?]: 6.33 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -3.4 Average estimated free energy [?]: -10.93 Minimum estimated free energy [?]: -23.2

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 13 Average number of free bases in hairpin loops [?]: 8 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 8 Average number of free bases in internal loops: 4.25 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 1 Average internal loop absolute asymmetry: 0.5 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 5 Average number of free bases in multi-loops: 3 Minimum number of free bases in multi-loop: 1 Maximum multi-loop absolute asymmetry: 4 Average multi-loop absolute asymmetry: 2.67 Minimum multi-loop absolute asymmetry: 2 Maximum multi-loop relative asymmetry: 5 Average multi-loop relative asymmetry: 1.8 Minimum multi-loop relative asymmetry: 0.2 Maximum number of branches in multi-loops: 3 Average number of branches in multi-loops: 3 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AG non-canonical base pairs: 2 Total number of GG non-canonical base pairs: 1

Pseudoknot features

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