RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00093
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00093
Molecule name [?]:	THE SOLUTION STRUCTURE OF THE MINOR FAMILY OF THE MUTANT STEM LOOP C 5'UUA3' TRILOOP OF BROME MOSAIC
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1I4C
Reference [?]:	C.H.KIM,I.TINOCO JR.. STRUCTURAL AND THERMODYNAMIC STUDIES ON MUTANT RNA MOTIFS THAT IMPAIR THE SPECIFICITY BETWEEN A VIRAL REPLICASE AND ITS PROMOTER.. J.MOL.BIOL. V. 307 827 2001 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	13
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00092
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	10

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	5
Maximum length of a stem [?]:	5
Average length of a stem [?]:	5
Minimum length of a stem [?]:	5
Maximum estimated free energy [?]:	-11
Average estimated free energy [?]:	-11
Minimum estimated free energy [?]:	-11

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	3
Average number of free bases in hairpin loops [?]:	3
Minimum number of free bases in hairpin loop [?]:	3

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features