RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00110
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00110
Molecule name [?]:	SOLUTION STRUCTURE OF HIV-1LAI MUTATED SL1 HAIRPIN
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1JTJ
Reference [?]:	F.KIEKEN,E.ARNOULT,F.BARBAULT,F.PAQUET, T.HUYNH-DINH,J.PAOLETTI,D.GENEST,G.LANCELOT. HIV-1(LAI) GENOMIC RNA: COMBINED USED OF NMR AND MOLECULAR DYNAMICS SIMULATION FOR STUDYING THE STRUCTURE AND INTERNAL DYNAMICS OF A MUTATED SL1 HAIRPIN.. EUR.BIOPHYS.J. V. 31 521 2002 ASTM EBJOE8 GW ISSN 0175-7571
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	23
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	9
Number of paired bases [?]:	14

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	7
Maximum length of a stem [?]:	7
Average length of a stem [?]:	7
Minimum length of a stem [?]:	7
Maximum estimated free energy [?]:	-12
Average estimated free energy [?]:	-12
Minimum estimated free energy [?]:	-12

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	9
Average number of free bases in hairpin loops [?]:	9
Minimum number of free bases in hairpin loop [?]:	9

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features