RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00131
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Format:

Molecule ID [?]:	PDB_00131
Molecule name [?]:	SOLUTION NMR STRUCTURE OF AN ANALOG OF THE YEAST TRNA PHE T STEM LOOP CONTAINING RIBOTHYMIDINE AT IT
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1KOS
Reference [?]:	K.M.KOSHLAP,R.GUENTHER,E.SOCHACKA,A.MALKIEWICZ, P.F.AGRIS. A DISTINCTIVE RNA FOLD: THE SOLUTION STRUCTURE OF AN ANALOGUE OF THE YEAST TRNAPHE T PSI C DOMAIN.. BIOCHEMISTRY V. 38 8647 1999 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	YEAST
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	17
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	7
Number of paired bases [?]:	10

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	5
Maximum length of a stem [?]:	5
Average length of a stem [?]:	5
Minimum length of a stem [?]:	5
Maximum estimated free energy [?]:	-8.5
Average estimated free energy [?]:	-8.5
Minimum estimated free energy [?]:	-8.5

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features