RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00146
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00146
Molecule name [?]:	SEPARATE FITTING OF THE ANTICODON LOOP REGION OF TRNA (NUCLEOTIDE 26-42) IN THE LOW RESOLUTION CRYO-
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1LU3
Reference [?]:	M.VALLE,J.SENGUPTA,N.K.SWAMI,R.A.GRASSUCCI, N.BURKHARDT,K.H.NIERHAUS,R.K.AGRAWAL,J.FRANK. CRYO-EM REVEALS AN ACTIVE ROLE FOR AMINOACYL-TRNA IN THE ACCOMMODATION PROCESS.. EMBO J. V. 21 3557 2002 ASTM EMJODG UK ISSN 0261-4189
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SACCHAROMYCES CEREVISIAE
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION16.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:	1
Length [?]:	17
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	9
Number of paired bases [?]:	8

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	4
Maximum length of a stem [?]:	4
Average length of a stem [?]:	4
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-6.6
Average estimated free energy [?]:	-6.6
Minimum estimated free energy [?]:	-6.6

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features