RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00148
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00148
Molecule name [?]:	NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 3 MODIFICATIONS (OMC32 OMG34 M5C40)
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1LUX
Reference [?]:	J.W.STUART,K.M.KOSHLAP,R.GUENTHER,P.F.AGRIS. NATURALLY-OCCURRING MODIFICATION RESTRICTS THE ANTICODON DOMAIN CONFORMATIONAL SPACE OF TRNA(PHE).. J.MOL.BIOL. V. 334 901 2003 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	YEAST
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	17
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00147
Number of domains [?]:	1
Number of unpaired bases [?]:	5
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-9.9
Average estimated free energy [?]:	-9.9
Minimum estimated free energy [?]:	-9.9

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	5
Average number of free bases in hairpin loops [?]:	5
Minimum number of free bases in hairpin loop [?]:	5

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AC non-canonical base pairs:	1

Pseudoknot features