RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00155
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00155
Molecule name [?]:	CRYSTAL STRUCTURE ANALYSIS OF A 26MER RNA MOLECULE, REPRESENTING A NEW RNA MOTIF, THE HOOK-TURN
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1MHK
Reference [?]:	S.SZEP,J.WANG,P.B.MOORE. THE CRYSTAL STRUCTURE OF A 26-NUCLEOTIDE RNA CONTAINING A HOOK-TURN. RNA V. 9 44 2003 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Other RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	26
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	10
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-9
Average estimated free energy [?]:	-9
Minimum estimated free energy [?]:	-9

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	10
Average number of free bases in hairpin loops [?]:	10
Minimum number of free bases in hairpin loop [?]:	10

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features