RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00158 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00158 Molecule name [?]: THE SOLUTION STRUCTURE OF THE LOOP E REGION OF THE 5S RRNA FROM SPINACH CHLOROPLASTS. Source [?]: RCSB Protein Data Bank Source ID [?]: 1MNX Reference [?]: P.VALLURUPALLI,P.B.MOORE. THE SOLUTION STRUCTURE OF THE LOOP E REGION OF THE 5S RRNA FROM SPINACH CHLOROPLASTS. J.MOL.BIOL. V. 325 843 2003 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: 5S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SPINACIA OLERACEA Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 42 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 40

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 20 Maximum length of a stem [?]: 20 Average length of a stem [?]: 20 Minimum length of a stem [?]: 20 Maximum estimated free energy [?]: -24.9 Average estimated free energy [?]: -24.9 Minimum estimated free energy [?]: -24.9

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 6 Total number of AA non-canonical base pairs: 2 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 3

Pseudoknot features

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