RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00213
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00213
Molecule name [
?
]:
SOLUTION STRUCTURE OF MLV PSI SITE
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1S9S
Reference [
?
]:
V.D'SOUZA,A.DEY,D.HABIB,M.F.SUMMERS. NMR STRUCTURE OF THE 101-NUCLEOTIDE CORE ENCAPSIDATION SIGNAL OF THE MOLONEY MURINE LEUKEMIA VIRUS.. J.MOL.BIOL. V. 337 427 2004 ASTM JMOBAK UK ISSN 0022-2836
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
101
Fragments used [
?
]:
Yes
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00748
Number of domains [
?
]:
3
Number of unpaired bases [
?
]:
19
Number of paired bases [
?
]:
82
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
6
Number of base pairs in stems [
?
]:
41
Maximum length of a stem [
?
]:
14
Average length of a stem [
?
]:
6.83
Minimum length of a stem [
?
]:
3
Maximum estimated free energy [
?
]:
-5.7
Average estimated free energy [
?
]:
-11.25
Minimum estimated free energy [
?
]:
-22.9
Hairpin loop features
Number of hairpin loops [
?
]:
3
Maximum number of free bases in hairpin loops [
?
]:
4
Average number of free bases in hairpin loops [
?
]:
2.67
Minimum number of free bases in hairpin loop [
?
]:
2
Bulge loop features
Number of bulge loops [
?
]:
3
Maximum number of free bases in bulge loops [
?
]:
4
Average number of free bases in bulge loops [
?
]:
1.17
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
5
Total number of AC non-canonical base pairs:
1
Total number of AG non-canonical base pairs:
3
Total number of UU non-canonical base pairs:
1
Pseudoknot features
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