RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00219
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00219
Molecule name [?]:	SOLUTION STRUCTURE OF ITALY1 ("INITIATOR TRNA ANTICODON LOOP FROM YEAST"), AN UNMODIFIED 21-NT RNA W
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1SZY
Reference [?]:	D.C.SCHWEISGUTH,P.B.MOORE. ON THE CONFORMATION OF THE ANTICODON LOOPS OF INITIATOR AND ELONGATOR METHIONINE TRNAS.. J.MOL.BIOL. V. 267 505 1997 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	YEAST
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	21
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	7
Number of paired bases [?]:	14

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	7
Maximum length of a stem [?]:	7
Average length of a stem [?]:	7
Minimum length of a stem [?]:	7
Maximum estimated free energy [?]:	-17.5
Average estimated free energy [?]:	-17.5
Minimum estimated free energy [?]:	-17.5

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features