RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00254
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00254
Molecule name [?]:	5'-R(CPGPUPAPCPG)-3'
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	377D
Reference [?]:	R.BISWAS,S.N.MITRA,M.SUNDARALINGAM. 1.76 A STRUCTURE OF A PYRIMIDINE START ALTERNATING A-RNA HEXAMER R(CGUAC)DG.. ACTA CRYSTALLOGR.,SECT.D V. 54 570 1998 ASTM ABCRE6 DK ISSN 0907-4449
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.76 ANGSTROMS; ran through RNAview
Number of molecules [?]:	4
Length [?]:	24
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	0
Number of paired bases [?]:	24

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	12
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-10.5
Average estimated free energy [?]:	-10.5
Minimum estimated free energy [?]:	-10.5

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features