RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00260
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00260
Molecule name [?]:	5'-R(CPGPCPCPAPGPCPG)-3'
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	402D
Reference [?]:	S.B.JANG,L.W.HUNG,Y.I.CHI,E.L.HOLBROOK,R.J.CARTER, S.R.HOLBROOK. STRUCTURE OF AN RNA INTERNAL LOOP CONSISTING OF TANDEM C-A+ BASE PAIRS.. BIOCHEMISTRY V. 37 11726 1998 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.30 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	16
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-11.6
Average estimated free energy [?]:	-11.6
Minimum estimated free energy [?]:	-11.6

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AC non-canonical base pairs:	2

Pseudoknot features