RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00261
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00261
Molecule name [?]:	STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE LIKE A.C MISMATCHES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	405D
Reference [?]:	B.PAN,S.N.MITRA,M.SUNDARALINGAM. STRUCTURE OF A 16-MER RNA DUPLEX R(GCAGACUUAAAUCUGC)2 WITH WOBBLE C.A+ MISMATCHES.. J.MOL.BIOL. V. 283 977 1998 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	32
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	32

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	16
Maximum length of a stem [?]:	16
Average length of a stem [?]:	16
Minimum length of a stem [?]:	16
Maximum estimated free energy [?]:	-23.1
Average estimated free energy [?]:	-23.1
Minimum estimated free energy [?]:	-23.1

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AC non-canonical base pairs:	2

Pseudoknot features