RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00262
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00262
Molecule name [?]:	CRYSTAL STRUCTURE OF AN RNA R(CCCIUGGG) WITH THREE INDEPENDENT DUPLEXES INCORPORATING TANDEM I.U WOB
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	409D
Reference [?]:	B.PAN,S.N.MITRA,L.SUN,D.HART,M.SUNDARALINGAM. CRYSTAL STRUCTURE OF AN RNA OCTAMER DUPLEX R(CCCIUGGG)2 INCORPORATING TANDEM I.U WOBBLES.. NUCLEIC ACIDS RES. V. 26 5699 1998 ASTM NARHAD UK ISSN 0305-1048
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:	6
Length [?]:	48
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	3
Number of unpaired bases [?]:	0
Number of paired bases [?]:	48

Click on any header below for additional features.

Stem features

Number of stems [?]:	3
Number of base pairs in stems [?]:	24
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-13.2
Average estimated free energy [?]:	-13.2
Minimum estimated free energy [?]:	-13.2

Hairpin loop features

Number of hairpin loops [?]:	3
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features