RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00263
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00263
Molecule name [?]:	CRYSTAL STRUCTURE OF A 16-MER RNA DUPLEX WITH NON-ADJACENT A(ANTI).G(SYN) MISMATCHES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	420D
Reference [?]:	B.PAN,S.N.MITRA,M.SUNDARALINGAM. CRYSTAL STRUCTURE OF AN RNA 16-MER DUPLEX R(GCAGAGUUAAAUCUGC)2 WITH NONADJACENT G(SYN).A+(ANTI) MISPAIRS.. BIOCHEMISTRY V. 38 2826 1999 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.90 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	32
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_01096
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	32

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	16
Maximum length of a stem [?]:	16
Average length of a stem [?]:	16
Minimum length of a stem [?]:	16
Maximum estimated free energy [?]:	-23.1
Average estimated free energy [?]:	-23.1
Minimum estimated free energy [?]:	-23.1

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of AG non-canonical base pairs:	2

Pseudoknot features