RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00267
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00267
Molecule name [?]:	5'-R(UPAPGPCPUPCPC)-3', 5'-R(GPGPGPGPCPUPA)-3'
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	434D
Reference [?]:	U.MUELLER,H.SCHUBEL,M.SPRINZL,U.HEINEMANN. CRYSTAL STRUCTURE OF ACCEPTOR STEM OF TRNA(ALA) FROM ESCHERICHIA COLI SHOWS UNIQUE G.U WOBBLE BASE PAIR AT 1.16 A RESOLUTION.. RNA V. 5 670 1999 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.16 ANGSTROMS; ran through RNAview
Number of molecules [?]:	4
Length [?]:	28
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00273, PDB_00274
Number of domains [?]:	2
Number of unpaired bases [?]:	0
Number of paired bases [?]:	28

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	14
Maximum length of a stem [?]:	7
Average length of a stem [?]:	7
Minimum length of a stem [?]:	7
Maximum estimated free energy [?]:	-13.7
Average estimated free energy [?]:	-13.7
Minimum estimated free energy [?]:	-13.7

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features