RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00271
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00271
Molecule name [?]:	5'-R(CPUPGPGPGPCPGPG)-3', 5'- R(CPCPGPCPCPUPGPG)-3'
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	439D
Reference [?]:	M.PERBANDT,M.VALLAZZA,C.LIPPMANN,C.BETZEL, V.A.ERDMANN. STRUCTURE OF AN RNA DUPLEX WITH AN UNUSUAL G.C PAIR IN WOBBLE-LIKE CONFORMATION AT 1.6 A RESOLUTION.. ACTA CRYSTALLOGR.,SECT.D V. 57 219 2001 ASTM ABCRE6 DK ISSN 0907-4449
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.60 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	16
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-16.3
Average estimated free energy [?]:	-16.3
Minimum estimated free energy [?]:	-16.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features