RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00283 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00283 Molecule name [?]: THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE P Source [?]: RCSB Protein Data Bank Source ID [?]: 165D Reference [?]: W.B.CRUSE,P.SALUDJIAN,E.BIALA,P.STRAZEWSKI, T.PRANGE,O.KENNARD. STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6-A RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE.. PROC.NATL.ACAD.SCI.USA V. 91 4160 1994 ASTM PNASA6 US ISSN 0027-8424 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.55 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 18 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 8 Average length of a stem [?]: 8 Minimum length of a stem [?]: 8 Maximum estimated free energy [?]: -11 Average estimated free energy [?]: -11 Minimum estimated free energy [?]: -11

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 1 Average number of free bases in hairpin loops [?]: 1 Minimum number of free bases in hairpin loop [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of CU non-canonical base pairs: 2

Pseudoknot features

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