RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00482 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00482 Molecule name [?]: CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN AND A 29-MER SRD RNA ANALOG Source [?]: RCSB Protein Data Bank Source ID [?]: 1JBS Reference [?]: X.YANG,T.GERCZEI,L.T.GLOVER,C.C.CORRELL. CRYSTAL STRUCTURES OF RESTRICTOCIN-INHIBITOR COMPLEXES WITH IMPLICATIONS FOR RNA RECOGNITION AND BASE FLIPPING.. NAT.STRUCT.BIOL. V. 8 968 2001 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.97 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 58 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 10 Number of paired bases [?]: 48

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 24 Maximum length of a stem [?]: 9 Average length of a stem [?]: 6 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -6.8 Minimum estimated free energy [?]: -13.6

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 8 Total number of AA non-canonical base pairs: 2 Total number of AG non-canonical base pairs: 2 Total number of CC non-canonical base pairs: 2 Total number of CU non-canonical base pairs: 2

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia