RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00495
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00495
Molecule name [?]:	NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1JU7
Reference [?]:	E.S.DEJONG,W.F.MARZLUFF,E.P.NIKONOWICZ. NMR STRUCTURE AND DYNAMICS OF THE RNA-BINDING SITE FOR THE HISTONE MRNA STEM-LOOP BINDING PROTEIN.. RNA V. 8 83 2002 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	16
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00497
Number of domains [?]:	1
Number of unpaired bases [?]:	4
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-15.4
Average estimated free energy [?]:	-15.4
Minimum estimated free energy [?]:	-15.4

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	4
Average number of free bases in hairpin loops [?]:	4
Minimum number of free bases in hairpin loop [?]:	4

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features