RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00526
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00526
Molecule name [?]:	RNA APTAMER COMPLEXED WITH ARGININE, NMR
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1KOC
Reference [?]:	Y.YANG,M.KOCHOYAN,P.BURGSTALLER,E.WESTHOF,M.FAMULOK. STRUCTURAL BASIS OF LIGAND DISCRIMINATION BY TWO RELATED RNA APTAMERS RESOLVED BY NMR SPECTROSCOPY.. SCIENCE V. 272 1343 1996 ASTM SCIEAS US ISSN 0036-8075
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	2
Length [?]:	25
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	19
Number of paired bases [?]:	6

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	3
Maximum length of a stem [?]:	3
Average length of a stem [?]:	3
Minimum length of a stem [?]:	3
Maximum estimated free energy [?]:	-2.4
Average estimated free energy [?]:	-2.4
Minimum estimated free energy [?]:	-2.4

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	11
Average number of free bases in hairpin loops [?]:	11
Minimum number of free bases in hairpin loop [?]:	11

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of GG non-canonical base pairs:	1

Pseudoknot features