RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00537
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00537
Molecule name [?]:	STRUCTURE OF THE LICT BACTERIAL ANTITERMINATOR PROTEIN IN COMPLEX WITH ITS RNA TARGET
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1L1C
Reference [?]:	Y.YANG,N.DECLERCK,X.MANIVAL,S.AYMERICH,M.KOCHOYAN. SOLUTION STRUCTURE OF THE LICT-RNA ANTITERMINATION COMPLEX: CAT CLAMPING RAT.. EMBO J. V. 21 1987 2002 ASTM EMJODG UK ISSN 0261-4189
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	29
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	11
Number of paired bases [?]:	18

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	9
Maximum length of a stem [?]:	5
Average length of a stem [?]:	4.5
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-5.5
Average estimated free energy [?]:	-7.6
Minimum estimated free energy [?]:	-9.7

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	2
Average number of free bases in bulge loops [?]:	1
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features