RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00603
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00603
Molecule name [?]:	SACCHARIDE-RNA RECOGNITION IN THE NEOMYCIN B / RNA APTAMER COMPLEX
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1NEM
Reference [?]:	L.JIANG,A.MAJUMDAR,W.HU,T.J.JAISHREE,W.XU,D.J.PATEL. SACCHARIDE-RNA RECOGNITION IN A COMPLEX FORMED BETWEEN NEOMYCIN B AND AN RNA APTAMER. STRUCTURE FOLD.DES. V. 7 817 1999 ASTM FODEFH UK ISSN 1359-0278
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	23
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	20

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	10
Maximum length of a stem [?]:	10
Average length of a stem [?]:	10
Minimum length of a stem [?]:	10
Maximum estimated free energy [?]:	-14.5
Average estimated free energy [?]:	-14.5
Minimum estimated free energy [?]:	-14.5

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	3
Average number of free bases in hairpin loops [?]:	3
Minimum number of free bases in hairpin loop [?]:	3

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features