RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00611 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00611 Molecule name [?]: 2.9 A CRYSTAL STRUCTURE OF STREPTOMYCIN RNA-APTAMER Source [?]: RCSB Protein Data Bank Source ID [?]: 1NTA Reference [?]: V.TERESHKO,E.SKRIPKIN,D.J.PATEL. ENCAPSULATING STREPTOMYCIN WITHIN A SMALL 40-MER RNA. CHEM.BIOL. V. 10 175 2003 ASTM CBOLE2 UK ISSN 1074-5521 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.90 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 40 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00612 Number of domains [?]: 1 Number of unpaired bases [?]: 18 Number of paired bases [?]: 22

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 11 Maximum length of a stem [?]: 4 Average length of a stem [?]: 3.67 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -4.6 Average estimated free energy [?]: -6.43 Minimum estimated free energy [?]: -8.8

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 1 Average number of free bases in hairpin loops [?]: 1 Minimum number of free bases in hairpin loop [?]: 1

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 7 Average number of free bases in internal loops: 4 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 6 Average internal loop absolute asymmetry: 4 Minimum internal loop absolute asymmetry: 2 Maximum internal loop relative asymmetry: 7 Average internal loop relative asymmetry: 4 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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