RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00686
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00686
Molecule name [?]:	CRYSTAL STRUCTURE OF P19 COMPLEXED WITH 19-BP SMALL INTERFERING RNA
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1R9F
Reference [?]:	K.YE,L.MALININA,D.J.PATEL. RECOGNITION OF SMALL INTERFERING RNA BY A VIRAL SUPPRESSOR OF RNA. NATURE V. 426 874 2003 ASTM NATUAS UK ISSN 0028-0836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.85 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	38
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	0
Number of paired bases [?]:	38

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	19
Maximum length of a stem [?]:	19
Average length of a stem [?]:	19
Minimum length of a stem [?]:	19
Maximum estimated free energy [?]:	-37.7
Average estimated free energy [?]:	-37.7
Minimum estimated free energy [?]:	-37.7

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features