RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00687
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Format:

Molecule ID [?]:	PDB_00687
Molecule name [?]:	ATP BINDING RNA APTAMER IN COMPLEX WITH AMP, NMR, 10 STRUCTURES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1RAW
Reference [?]:	T.DIECKMANN,E.SUZUKI,G.K.NAKAMURA,J.FEIGON. SOLUTION STRUCTURE OF AN ATP-BINDING RNA APTAMER REVEALS A NOVEL FOLD. RNA V. 2 628 1996 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	36
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	12
Number of paired bases [?]:	24

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	12
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-11.2
Average estimated free energy [?]:	-11.6
Minimum estimated free energy [?]:	-12

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	10
Average number of free bases in bulge loops [?]:	5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of GG non-canonical base pairs:	1

Pseudoknot features