RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00688
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00688
Molecule name [?]:	CRYSTAL STRUCTURE OF RNASE III MUTANT E110K FROM AQUIFEX AEOLICUS COMPLEXED WITH DS-RNA AT 2.15 ANGS
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1RC7
Reference [?]:	J.BLASZCZYK,J.GAN,J.E.TROPEA,D.L.COURT,D.S.WAUGH, X.JI. NONCATALYTIC ASSEMBLY OF RIBONUCLEASE III WITH DOUBLE-STRANDED RNA.. STRUCTURE V. 12 457 2004 ASTM STRUE6 UK ISSN 0969-2126
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.15 ANGSTROMS; ran through RNAview
Number of molecules [?]:	4
Length [?]:	40
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00342
Number of domains [?]:	2
Number of unpaired bases [?]:	0
Number of paired bases [?]:	40

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	20
Maximum length of a stem [?]:	10
Average length of a stem [?]:	10
Minimum length of a stem [?]:	10
Maximum estimated free energy [?]:	-27.4
Average estimated free energy [?]:	-27.4
Minimum estimated free energy [?]:	-27.4

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features