RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00698
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00698
Molecule name [?]:	CRYSTAL STRUCTURE OF CIRV P19 BOUND TO SIRNA
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1RPU
Reference [?]:	J.M.VARGASON,G.SZITTYA,J.BURGYAN,T.M.T.HALL. SIZE SELECTIVE RECOGNITION OF SIRNA BY AN RNA SILENCING SUPPRESSOR. CELL (CAMBRIDGE,MASS.) V. 115 799 2003 ASTM CELLB5 US ISSN 0092-8674
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	42
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	4
Number of paired bases [?]:	38

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	19
Maximum length of a stem [?]:	19
Average length of a stem [?]:	19
Minimum length of a stem [?]:	19
Maximum estimated free energy [?]:	-37
Average estimated free energy [?]:	-37
Minimum estimated free energy [?]:	-37

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	2
Average number of free bases in hairpin loops [?]:	2
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of CC non-canonical base pairs:	1

Pseudoknot features