RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00705
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00705
Molecule name [?]:	AVERAGE SOLUTION STRUCTURE OF A PSEUDO-5'-SPLICE SITE FROM THE NEGATIVE REGULATOR OF SPLICING OF ROU
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1S2F
Reference [?]:	J.CABELLO-VILLEGAS,K.E.GILES,A.M.SOTO,P.YU, A.MOUGIN,K.L.BEEMON,Y.X.WANG. SOLUTION STRUCTURE OF THE PSEUDO-5' SPLICE SITE OF A RETROVIRAL SPLICING SUPPRESSOR.. RNA V. 10 1388 2004 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	23
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00706
Number of domains [?]:	1
Number of unpaired bases [?]:	7
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	6
Average length of a stem [?]:	4
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-1.5
Average estimated free energy [?]:	-6.5
Minimum estimated free energy [?]:	-11.5

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	6
Average number of free bases in hairpin loops [?]:	6
Minimum number of free bases in hairpin loop [?]:	6

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features