RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00728 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00728 Molecule name [?]: SOLUTION STRUCTURE OF DOUBLE-STRANDED RNA BINDING DOMAIN OF S. CEREVISIAE RNASE III (RNT1P) IN COMPL Source [?]: RCSB Protein Data Bank Source ID [?]: 1T4L Reference [?]: H.WU,A.HENRAS,G.CHANFREAU,J.FEIGON. STRUCTURAL BASIS FOR RECOGNITION OF THE AGNN TETRALOOP RNA FOLD BY THE DOUBLE-STRANDED RNA-BINDING DOMAIN OF RNT1P RNASE III.. PROC.NATL.ACAD.SCI.USA V. 101 8307 2004 ASTM PNASA6 US ISSN 0027-8424 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SACCHAROMYCES CEREVISIAE Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 32 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 30

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 15 Maximum length of a stem [?]: 15 Average length of a stem [?]: 15 Minimum length of a stem [?]: 15 Maximum estimated free energy [?]: -24.3 Average estimated free energy [?]: -24.3 Minimum estimated free energy [?]: -24.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AA non-canonical base pairs: 1

Pseudoknot features

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