RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00737
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00737
Molecule name [?]:	SACCHARIDE-RNA RECOGNITION IN AN AMINOGLYCOSIDE ANTIBIOTIC- RNA APTAMER COMPLEX, NMR, 7 STRUCTURES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1TOB
Reference [?]:	L.JIANG,A.K.SURI,R.FIALA,D.J.PATEL. SACCHARIDE-RNA RECOGNITION IN AN AMINOGLYCOSIDE ANTIBIOTIC-RNA APTAMER COMPLEX.. CHEM.BIOL. V. 4 35 1997 ASTM CBOLE2 UK ISSN 1074-5521
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	27
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	5
Number of paired bases [?]:	22

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	11
Maximum length of a stem [?]:	8
Average length of a stem [?]:	5.5
Minimum length of a stem [?]:	3
Maximum estimated free energy [?]:	-2.2
Average estimated free energy [?]:	-10.05
Minimum estimated free energy [?]:	-17.9

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	4
Average number of free bases in hairpin loops [?]:	4
Minimum number of free bases in hairpin loop [?]:	4

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of UU non-canonical base pairs:	1

Pseudoknot features