RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00750 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00750 Molecule name [?]: CRYSTAL STRUCTURE OF THE SPECIFICITY DOMAIN OF RIBONUCLEASE P OF THE A-TYPE Source [?]: RCSB Protein Data Bank Source ID [?]: 1U9S Reference [?]: A.S.KRASILNIKOV,Y.XIAO,T.PAN,A.MONDRAGON. BASIS FOR STRUCTURAL DIVERSITY IN HOMOLOGOUS RNAS.. SCIENCE V. 306 104 2004 ASTM SCIEAS US ISSN 0036-8075 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.90 ANGSTROMS; ran through RNAview Number of molecules [?]: 1 Length [?]: 155 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 57 Number of paired bases [?]: 98

Click on any header below for additional features.

Stem features Number of stems [?]: 12 Number of base pairs in stems [?]: 49 Maximum length of a stem [?]: 9 Average length of a stem [?]: 4.08 Minimum length of a stem [?]: 2 Maximum estimated free energy [?]: -2.2 Average estimated free energy [?]: -8.42 Minimum estimated free energy [?]: -21

Hairpin loop features Number of hairpin loops [?]: 5 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 4 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 5 Maximum number of free bases in bulge loops [?]: 3 Average number of free bases in bulge loops [?]: 1 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 12 Average number of free bases in multi-loops: 3.38 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 11 Average multi-loop absolute asymmetry: 3.58 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 12 Average multi-loop relative asymmetry: 1.52 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of AC non-canonical base pairs: 1

Pseudoknot features

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