RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00754
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00754
Molecule name [?]:	U1A MUTANT/RNA COMPLEX + GLYCEROL
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1URN
Reference [?]:	C.OUBRIDGE,N.ITO,P.R.EVANS,C.H.TEO,K.NAGAI. CRYSTAL STRUCTURE AT 1.92 A RESOLUTION OF THE RNA-BINDING DOMAIN OF THE U1A SPLICEOSOMAL PROTEIN COMPLEXED WITH AN RNA HAIRPIN.. NATURE V. 372 432 1994 ASTM NATUAS UK ISSN 0028-0836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.92 ANGSTROMS; ran through RNAview
Number of molecules [?]:	3
Length [?]:	55
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	3
Number of unpaired bases [?]:	31
Number of paired bases [?]:	24

Click on any header below for additional features.

Stem features

Number of stems [?]:	3
Number of base pairs in stems [?]:	12
Maximum length of a stem [?]:	5
Average length of a stem [?]:	4
Minimum length of a stem [?]:	3
Maximum estimated free energy [?]:	-5.7
Average estimated free energy [?]:	-6.73
Minimum estimated free energy [?]:	-7.7

Hairpin loop features

Number of hairpin loops [?]:	3
Maximum number of free bases in hairpin loops [?]:	10
Average number of free bases in hairpin loops [?]:	8
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features