RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00798
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00798
Molecule name [?]:	SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1WKS
Reference [?]:	S.BABA,M.KAJIKAWA,N.OKADA,G.KAWAI. SOLUTION STRUCTURE OF AN RNA STEM-LOOP DERIVED FROM THE 3' CONSERVED REGION OF EEL LINE UNAL2. RNA V. 10 1380 2004 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	17
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	14

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	7
Maximum length of a stem [?]:	7
Average length of a stem [?]:	7
Minimum length of a stem [?]:	7
Maximum estimated free energy [?]:	-10.6
Average estimated free energy [?]:	-10.6
Minimum estimated free energy [?]:	-10.6

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	3
Average number of free bases in hairpin loops [?]:	3
Minimum number of free bases in hairpin loop [?]:	3

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features