RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00800
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00800
Molecule name [?]:	C-TERMINAL DOMAIN OF ELONGATION FACTOR SELB COMPLEXED WITH SECIS RNA
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1WSU
Reference [?]:	S.YOSHIZAWA,L.RASUBALA,T.OSE,D.KOHDA,D.FOURMY, K.MAENAKA. STRUCTURAL BASIS FOR MRNA RECOGNITION BY ELONGATION FACTOR SELB. NAT.STRUCT.MOL.BIOL. V. 12 198 2005 US ISSN 1545-9993
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.30 ANGSTROMS; ran through RNAview
Number of molecules [?]:	3
Length [?]:	65
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	3
Number of unpaired bases [?]:	7
Number of paired bases [?]:	58

Click on any header below for additional features.

Stem features

Number of stems [?]:	3
Number of base pairs in stems [?]:	29
Maximum length of a stem [?]:	10
Average length of a stem [?]:	9.67
Minimum length of a stem [?]:	9
Maximum estimated free energy [?]:	-21
Average estimated free energy [?]:	-22.6
Minimum estimated free energy [?]:	-23.4

Hairpin loop features

Number of hairpin loops [?]:	3
Maximum number of free bases in hairpin loops [?]:	3
Average number of free bases in hairpin loops [?]:	2.33
Minimum number of free bases in hairpin loop [?]:	2

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features