RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00897 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00897 Molecule name [?]: THE STRUCTURE OF A RIBOSOMAL PROTEIN L1 IN COMPLEX WITH MRNA Source [?]: RCSB Protein Data Bank Source ID [?]: 1ZHO Reference [?]: N.NEVSKAYA,S.TISHCHENKO,S.VOLCHKOV,V.KLJASHTORNY, E.NIKONOVA,O.NIKONOV,A.NIKULIN,C.KOHRER,W.PIENDL, R.ZIMMERMANN,P.STOCKLEY,M.GARBER,S.NIKONOV. NEW INSIGHTS INTO THE INTERACTION OF RIBOSOMAL PROTEIN L1 WITH RNA.. J.MOL.BIOL. V. 355 747 2006 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Other Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: THERMUS THERMOPHILUS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.60 ANGSTROMS; ran through RNAview Number of molecules [?]: 4 Length [?]: 152 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 4 Number of unpaired bases [?]: 30 Number of paired bases [?]: 122

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 61 Maximum length of a stem [?]: 11 Average length of a stem [?]: 7.62 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -8.8 Average estimated free energy [?]: -14.8 Minimum estimated free energy [?]: -20.8

Hairpin loop features Number of hairpin loops [?]: 4 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 4 Average number of free bases in bulge loops [?]: 2 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 3 Maximum number of free bases in internal loops: 5 Average number of free bases in internal loops: 3 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 4 Minimum internal loop absolute asymmetry: 4 Maximum internal loop relative asymmetry: 5 Average internal loop relative asymmetry: 5 Minimum internal loop relative asymmetry: 5

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 5 Total number of AG non-canonical base pairs: 5

Pseudoknot features

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