RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01098 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01098 Molecule name [?]: THE NMR STRUCTURE OF AN INTERNAL LOOP FROM 23S RIBOSOMAL RNA OF DEINOCOCCUS RADIODURANS DIFFERS FROM Source [?]: RCSB Protein Data Bank Source ID [?]: 2H49 Reference [?]: N.SHANKAR,S.D.KENNEDY,G.CHEN,T.R.KRUGH,D.H.TURNER. THE NMR STRUCTURE OF AN INTERNAL LOOP FROM 23S RIBOSOMAL RNA DIFFERS FROM ITS STRUCTURE IN CRYSTALS OF 50S RIBOSOMAL SUBUNITS.. BIOCHEMISTRY V. 45 11776 2006 ASTM BICHAW US ISSN 0006-2960 Type [?]: 23S Ribosomal RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 18 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 18

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 9 Maximum length of a stem [?]: 9 Average length of a stem [?]: 9 Minimum length of a stem [?]: 9 Maximum estimated free energy [?]: -13.4 Average estimated free energy [?]: -13.4 Minimum estimated free energy [?]: -13.4

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 1

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia