RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule SPR_00335 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: SPR_00335 Molecule name [?]: Sprinzl tRNA RQ4800 Source [?]: Sprinzl tRNA Database Source ID [?]: RQ4800 Reference [?]: M. Sprinzl and K.S. Vassilenko, Compilation of tRNA sequences and sequences of tRNA genes, Nucleic Acids Research, 2005, Vol. 33, D139-D140. Type [?]: Transfer RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 72 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 28 Number of paired bases [?]: 44

Click on any header below for additional features.

Stem features Number of stems [?]: 4 Number of base pairs in stems [?]: 22 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5.5 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -5.4 Average estimated free energy [?]: -6.45 Minimum estimated free energy [?]: -7

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 7 Average number of free bases in hairpin loops [?]: 6.33 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 3 Average number of free bases in multi-loops: 1.25 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 3 Average multi-loop absolute asymmetry: 1.83 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 1.5 Average multi-loop relative asymmetry: 0.36 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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