RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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Analyse a single RNA molecule:
RNA STRAND ID:
Analyse all molecules in the database
To analyse a specific set of molecules, select the desired molecules through the
search page
, and analyse them using the form at the bottom of the result page.
Per molecule:
Molecule length
Number of stems
Number of hairpin loops
Number of bulges
Number of internal loops
Number of multi-loops
Number of pseudoknots
Number of bands
Number of domains
# base pairs to break for pseudoknot freeness
# bands to break for pseudoknot freeness
Average stem length
Average hairpin size
Average bulge size
Average internal loop size
Average multi-loop size
Cumulative distribution
Histograms
Correlation vs. molecule length
In all all molecules:
Stem length
Stem free energy (estimated)
Hairpin number of free bases
Bulge number of free bases
Internal loop number of free bases
Internal loop absolute asymmetry
Multi-loop number of free bases
Multi-loop average absolute asymmetry
Multi-loop number of branches
Exterior loop number of free bases
Pseudoknot number of bands
Pseudoknot - min # of base pairs to break
Pseudoknot - min # of bands to break
Pseudoknot length
Number of non-canonical base pairs and nearest neighbours
Cumulative distribution
Histograms
(Cummulative distributions are not applicable to non-canonical base pairs)
Remove outliers
(not applicable to correlations and non-canonical base pairs)
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Normalize by RNA type
(not applicable to non-canonical base pairs)
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Copyright © 2004-2008
BETA LAB
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University of British Columbia