RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00255 RNase P RNA, Prochlorococcus marinus, strain CCMP 1375 RNase P RNA Unknown RNase P Database Prochlorococcus marinus, strain CCMP 1375 387 ASE_00256 RNase P RNA, Prochlorococcus marinus, strain CCMP 1375 RNase P RNA Unknown RNase P Database Prochlorococcus marinus, strain CCMP 1375 387 ASE_00257 RNase P RNA, Planctomyces maris, strain ATCC 29201 RNase P RNA Unknown RNase P Database Planctomyces maris, strain ATCC 29201 320 ASE_00259 RNase P RNA, Porphyra purpurea RNase P RNA Unknown RNase P Database Porphyra purpurea 383 ASE_00260 RNase P RNA, Pseudomonas putida, strain IAM 1236 RNase P RNA Unknown RNase P Database Pseudomonas putida, strain IAM 1236 295 ASE_00261 RNase P RNA, Pongo pygmaeus RNase P RNA Unknown RNase P Database Pongo pygmaeus 320 ASE_00262 RNase P RNA, Plesiomonas shigelloides, strain M51 RNase P RNA Unknown RNase P Database Plesiomonas shigelloides, strain M51 303 ASE_00263 RNase P RNA, Pirellula staleyi, strain DSM 6068 RNase P RNA Unknown RNase P Database Pirellula staleyi, strain DSM 6068 376 ASE_00264 RNase P RNA, Pichia strasburgensis, strain NRRL Y-11980 RNase P RNA Unknown RNase P Database Pichia strasburgensis, strain NRRL Y-11980 314 ASE_00265 RNase P RNA, Pseudomonas stutzeri, strain IAM 12668 RNase P RNA Unknown RNase P Database Pseudomonas stutzeri, strain IAM 12668 294

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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