RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00044 d.16.b.A.aeolicus 16S rRNA Aquifex aeolicus Gutell Lab CRW Site d.16.b.A.aeolicus 1588 CRW_00045 d.16.b.A.calcoaceticus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.calcoaceticus 1537 CRW_00046 d.16.b.A.capsulatum 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.capsulatum 1498 CRW_00047 d.16.b.A.caulinodans 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.caulinodans 1482 CRW_00048 d.16.b.A.globiformis 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.globiformis 1531 CRW_00049 d.16.b.A.hydrophila 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.hydrophila 1544 CRW_00050 d.16.b.A.israelii 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.israelii 1550 CRW_00051 d.16.b.A.pyrophilus 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.pyrophilus 1582 CRW_00052 d.16.b.A.tumefaciens 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.tumefaciens 1489 CRW_00053 d.16.b.A.vinosum 16S rRNA Unknown Gutell Lab CRW Site d.16.b.A.vinosum 1528

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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