RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Non-canonical base pairs features Number of any non-canonical base pairs per molecule, whose nearest neighbours are: any and any , and second nearest neighbours are any and any: Greater than or equal to 1

Search results: 2296 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00298 RNase P RNA, volunteer Rr368 RNase P RNA Unknown RNase P Database volunteer Rr368 368 ASE_00299 RNase P RNA, Sulfolobus acidocaldarius, strain P1 RNase P RNA Sulfolobus acidocaldarius RNase P Database Sulfolobus acidocaldarius, strain P1 315 ASE_00300 RNase P RNA, Staphylococcus aureus, strain WCUH29 RNase P RNA Staphylococcus aureus RNase P Database Staphylococcus aureus, strain WCUH29 397 ASE_00301 RNase P RNA, Staphylococcus aureus, strain aureus RNase P RNA Staphylococcus aureus RNase P Database Staphylococcus aureus, strain aureus 349 ASE_00302 RNase P RNA, Saccharomonospora azurea, strain K161T RNase P RNA Unknown RNase P Database Saccharomonospora azurea, strain K161T 339 ASE_00304 RNase P RNA, Streptomyces bikiniensis, strain Zorbonenis RNase P RNA Unknown RNase P Database Streptomyces bikiniensis, strain Zorbonenis 398 ASE_00305 RNase P RNA, Streptococcus bovis, strain ATCC 33317 RNase P RNA Unknown RNase P Database Streptococcus bovis, strain ATCC 33317 331 ASE_00306 RNase P RNA, Saccharomonospora caesia, strain K163 RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain K163 339 ASE_00307 RNase P RNA, Saccharomonospora caesia, strain K182 RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain K182 339 ASE_00308 RNase P RNA, Saccharomonospora caesia, strain K200 RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain K200 339

Analyse the 2296 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2296 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2296 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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