RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00226 RNase P RNA, Neisseria meningitidis, strain MC58 RNase P RNA Unknown RNase P Database Neisseria meningitidis, strain MC58 360 ASE_00227 RNase P RNA, Nephroselmis olivacea, strain NIES-484 RNase P RNA Unknown RNase P Database Nephroselmis olivacea, strain NIES-484 398 ASE_00228 RNase P RNA, Nocardoides plantarum, strain NCIMB 12834 RNase P RNA Unknown RNase P Database Nocardoides plantarum, strain NCIMB 12834 307 ASE_00229 RNase P RNA, Nocardoides pyridinolyticus, strain KCTC 0074BP RNase P RNA Unknown RNase P Database Nocardoides pyridinolyticus, strain KCTC 0074BP 292 ASE_00230 RNase P RNA, Nocardoides simplex, strain KCTC 9106 RNase P RNA Unknown RNase P Database Nocardoides simplex, strain KCTC 9106 273 ASE_00231 RNase P RNA, Nocardoides sp., strain ATCC 39419 RNase P RNA Unknown RNase P Database Nocardoides sp., strain ATCC 39419 310 ASE_00232 RNase P RNA, Nocardoides sp., strain NSP41 RNase P RNA Unknown RNase P Database Nocardoides sp., strain NSP41 278 ASE_00233 RNase P RNA, Nostoc sp., strain PCC 6705 RNase P RNA Unknown RNase P Database Nostoc sp., strain PCC 6705 393 ASE_00234 RNase P RNA, Nostoc sp., strain PCC 7107 RNase P RNA Unknown RNase P Database Nostoc sp., strain PCC 7107 389 ASE_00235 RNase P RNA, Nostoc sp., strain PCC 7413 RNase P RNA Unknown RNase P Database Nostoc sp., strain PCC 7413 391

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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