RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Pseudoknot features Number of pseudoknots per molecule: Greater than or equal to 1

Search results: 2333 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00269 RNase P RNA, Yellowstone Pit#131 RNase P RNA Unknown RNase P Database Yellowstone Pit#131 303 ASE_00270 RNase P RNA, Octopus Spring Pink Filaments#101 RNase P RNA Unknown RNase P Database Octopus Spring Pink Filaments#101 381 ASE_00271 RNase P RNA, Prochlorococcus sp., strain NATL1 RNase P RNA Unknown RNase P Database Prochlorococcus sp., strain NATL1 333 ASE_00272 RNase P RNA, Prochlorococcus sp., strain NATL2 RNase P RNA Unknown RNase P Database Prochlorococcus sp., strain NATL2 323 ASE_00273 RNase P RNA, Prochlorococcus sp., strain PAC1A RNase P RNA Unknown RNase P Database Prochlorococcus sp., strain PAC1A 333 ASE_00274 RNase P RNA, Prochlorococcus sp., strain PAC1B RNase P RNA Unknown RNase P Database Prochlorococcus sp., strain PAC1B 334 ASE_00275 RNase P RNA, Prochlorococcus sp., strain PCC 9511 RNase P RNA Unknown RNase P Database Prochlorococcus sp., strain PCC 9511 307 ASE_00276 RNase P RNA, Prochlorococcus sp., strain TAK9803-2 RNase P RNA Unknown RNase P Database Prochlorococcus sp., strain TAK9803-2 308 ASE_00277 RNase P RNA, Prochlorococcus sp., strain TATL2 RNase P RNA Unknown RNase P Database Prochlorococcus sp., strain TATL2 311 ASE_00278 RNase P RNA, Prochlorococcus sp., strain TATL2 RNase P RNA Unknown RNase P Database Prochlorococcus sp., strain TATL2 308

Analyse the 2333 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2333 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2333 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia