RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any type Organism: Any Source: Any source , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Multi-loop features Number of multi-loops per molecule: Greater than or equal to 1 Number of free bases in multi-loops, per multi-loop: Less than or equal to 0 Number of multi-loop branches, per multi-loop: Greater than or equal to 3

Search results: 17090 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00722 Yers.ente._TRW-34054_1-381 tmRNA Unknown tmRNA Database Yers.ente._TRW-34054_1-381 381 TMR_00722 Yers.ente._TRW-34054_1-381 tmRNA Unknown tmRNA Database Yers.ente._TRW-34054_1-381 381 TMR_00721 Yers.berc._TRW-349968_1-381 tmRNA Unknown tmRNA Database Yers.berc._TRW-349968_1-381 381 TMR_00721 Yers.berc._TRW-349968_1-381 tmRNA Unknown tmRNA Database Yers.berc._TRW-349968_1-381 381 TMR_00720 Xyle.fast._TRW-155920_1-355 tmRNA Unknown tmRNA Database Xyle.fast._TRW-155920_1-355 355 TMR_00720 Xyle.fast._TRW-155920_1-355 tmRNA Unknown tmRNA Database Xyle.fast._TRW-155920_1-355 355 TMR_00719 Xyle.fast._TRW-155919_1-355 tmRNA Unknown tmRNA Database Xyle.fast._TRW-155919_1-355 355 TMR_00719 Xyle.fast._TRW-155919_1-355 tmRNA Unknown tmRNA Database Xyle.fast._TRW-155919_1-355 355 TMR_00718 Xyle.fast._AE009442_1-355 tmRNA Unknown tmRNA Database Xyle.fast._AE009442_1-355 355 TMR_00718 Xyle.fast._AE009442_1-355 tmRNA Unknown tmRNA Database Xyle.fast._AE009442_1-355 355

Analyse the 17090 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 17090 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 17090 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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