RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: RNase P Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 454 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00101 RNase P RNA, Deinococcus radiodurans, strain R1 RNase P RNA Deinococcus radiodurans RNase P Database Deinococcus radiodurans, strain R1 447 ASE_00102 RNase P RNA, Deinococcus radiodurans, strain 298 RNase P RNA Deinococcus radiodurans RNase P Database Deinococcus radiodurans, strain 298 486 ASE_00103 RNase P RNA, Danio rerio RNase P RNA Unknown RNase P Database Danio rerio 273 ASE_00104 RNase P RNA, Desulfovibrio vulgaris RNase P RNA Unknown RNase P Database Desulfovibrio vulgaris 359 ASE_00105 RNase P RNA, Dermocarpa sp., strain PCC 7437 RNase P RNA Unknown RNase P Database Dermocarpa sp., strain PCC 7437 359 ASE_00106 RNase P RNA, uncharacterized N2 fixer DU1 RNase P RNA Unknown RNase P Database uncharacterized N2 fixer DU1 294 ASE_00107 RNase P RNA, Erwinia agglomerulans RNase P RNA Unknown RNase P Database Erwinia agglomerulans 383 ASE_00108 RNase P RNA, Euproctus asper RNase P RNA Unknown RNase P Database Euproctus asper 307 ASE_00109 RNase P RNA, Escherichia coli, strain JM109 RNase P RNA Escherichia coli RNase P Database Escherichia coli, strain JM109 377 ASE_00110 RNase P RNA, Escherichia coli, strain RNase P RNA Escherichia coli RNase P Database Escherichia coli, strain 377

Analyse the 454 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 454 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 454 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia