RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Gutell Lab CRW Site , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 1056 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] CRW_00277 d.16.c.E.gracilis 16S rRNA Unknown Gutell Lab CRW Site d.16.c.E.gracilis 1491 CRW_00278 d.16.c.H.africana 16S rRNA Unknown Gutell Lab CRW Site d.16.c.H.africana 1504 CRW_00279 d.16.c.H.akashiwo 16S rRNA Unknown Gutell Lab CRW Site d.16.c.H.akashiwo 1537 CRW_00280 d.16.c.M.polymorpha 16S rRNA Unknown Gutell Lab CRW Site d.16.c.M.polymorpha 1496 CRW_00281 d.16.c.N.olivacea 16S rRNA Unknown Gutell Lab CRW Site d.16.c.N.olivacea 1514 CRW_00282 d.16.c.N.tabacum 16S rRNA Unknown Gutell Lab CRW Site d.16.c.N.tabacum 1486 CRW_00283 d.16.c.P.falciparum 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.falciparum 1426 CRW_00284 d.16.c.P.littoralis 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.littoralis 1505 CRW_00285 d.16.c.P.minor 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.minor 1496 CRW_00286 d.16.c.P.palmata 16S rRNA Unknown Gutell Lab CRW Site d.16.c.P.palmata 1486

Analyse the 1056 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 1056 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 1056 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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