RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: SRP Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 383 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] SRP_00301 SCH.POM. SRP RNA Unknown SRP Database SCH.POM. 256 SRP_00302 SCL.SCL. SRP RNA Unknown SRP Database SCL.SCL. 289 SRP_00303 SHE.ONE. SRP RNA Unknown SRP Database SHE.ONE. 116 SRP_00304 SHI.FL-A SRP RNA Unknown SRP Database SHI.FL-A 118 SRP_00305 SHI.FL-B SRP RNA Unknown SRP Database SHI.FL-B 118 SRP_00306 SIN.MEL. SRP RNA Unknown SRP Database SIN.MEL. 104 SRP_00307 SPR.LOP. SRP RNA Unknown SRP Database SPR.LOP. 161 SRP_00308 STA.AUR. SRP RNA Staphylococcus aureus SRP Database STA.AUR. 270 SRP_00309 STA.EPI. SRP RNA Unknown SRP Database STA.EPI. 270 SRP_00310 STR.AG-A SRP RNA Unknown SRP Database STR.AG-A 77

Analyse the 383 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 383 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 383 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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