RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: tmRNA Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 726 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00277 Kocu.vari._TRW-1272_1-352 tmRNA Unknown tmRNA Database Kocu.vari._TRW-1272_1-352 352 TMR_00278 Lact.acid._CP000033_1-369 tmRNA Unknown tmRNA Database Lact.acid._CP000033_1-369 369 TMR_00279 Lact.brev._CP000416_1-372 tmRNA Unknown tmRNA Database Lact.brev._CP000416_1-372 372 TMR_00280 Lact.case._CP000423_1-364 tmRNA Unknown tmRNA Database Lact.case._CP000423_1-364 364 TMR_00281 Lact.delb._AF440335_1-316 tmRNA Unknown tmRNA Database Lact.delb._AF440335_1-316 316 TMR_00282 Lact.delb._TRW-1584_1-368 tmRNA Unknown tmRNA Database Lact.delb._TRW-1584_1-368 368 TMR_00283 Lact.delb._TRW-321956_1-362 tmRNA Unknown tmRNA Database Lact.delb._TRW-321956_1-362 362 TMR_00284 Lact.gall._TRW-52242_1-367 tmRNA Unknown tmRNA Database Lact.gall._TRW-52242_1-367 367 TMR_00285 Lact.garv._AF375579_1-357 tmRNA Unknown tmRNA Database Lact.garv._AF375579_1-357 357 TMR_00286 Lact.gass._CP000413_1-366 tmRNA Unknown tmRNA Database Lact.gass._CP000413_1-366 366

Analyse the 726 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 726 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 726 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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